Anna A. Nikulova
Trainee Researcher

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Education and Research experience:

2010present time. Junior Researcher
2010present time. . ()
2007present time. Moscow State University, Faculty of Bioengineering and Bioinformatics, postgraduate student
06.201207.2012. Cold Spring Harbor Laboratory, New York, USA
10.201112.2011. Helmholtz Center, Munich, Germany
06.200507.2005. Leiden University Medical Center (Leiden, Netherlands)
20022007. Moscow State University, Faculty of Bioengineering and Bioinformatics

Awards:

Severin Prize, 2005.
Severin Prize, 2004.

Publications:

  Gogleva A.A. (prev. Nikulova), Gelfand M.S., Artamonova I.I. Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs. BMC Genomics. 2014 Mar 17;15:202. PubMed 

Nikulova A.A., Favorov A.V., Sutormin R.A., Makeev V.J., Mironov A.A. CORECLUST: identification of the conserved CRM grammar together with prediction of gene regulation. Nucleic Acids Res 2012 40(12): e93. PubMed  PDF

Nikulova A.A., Polishchuk M.S., Tumanian V.G., Makeev V., Mironov A.A., Favorov A.V. [Correlations between clusters of protein-DNA binding sites and the binding experimental data allow to predict a structure of regulatory modules]. Biofizika 2012 57(2): 212-214. Russian. PubMed  PDF

Romanenkov A.S., Ustyugov A.A., Zatsepin T.S., Nikulova A.A., Kolesnikov I.V., Metelev V.G., Oretskaya T.S., Kubareva E.A. Analysis of DNA-protein interactions in complexes of transcription factor NF-kappaB with DNA. Biochemistry (Mosc) 2005 70(11): 1212-1222. Russian. PubMed  PDF

Borisov A., Nikulova A.A. [A discrepancy between the experimental and theoretical data on energy migration from B800 to B850 in LH-2 antennary complexes in purple bacteria]. Biofizika 2004 49(4): 653-658. Russian. PubMed  PDF


Conferences:

Information Technologies and Systems, ITaS '12 (The 35th conference organized by Council of Young Scientists and Engineers of IITP RAS), 2012, Petrozavodsk, Russia
A.A. Nikulova, A.V. Artemov, Thorsten Schmidt. A Generic Java Framework for the Large-scale Comparison of NGS Data (poster)

International Conference on Bioinformatics Models, Methods and Algorithms BIOINFORMATICS 2012, 2012, Vilamoura, Portugal
A.A. Nikulova, A.V. Favorov, V.Yu. Makeev and A.A. Mironov. A generalized hidden Markov model for prediction of cis-regulatory modules in eukaryote genomes and description of their internal structure (oral presentation)

Information Technologies and Systems, ITaS '11 (The 34th conference organized by Council of Young Scientists and Engineers of IITP RAS), 2011, Gelendzhik, Russia
A.A. Nikulova, A.V. Favorov, A.A. Mironov. CORECLUST: prediction of cis-regulatory modules and revealing their internal structure (oral presentation)

International Moscow Conference on Computational Molecular Biology MCCMB11, 2011, Moscow, Russia
A.A. Nikulova, A.V. Favorov, A.A. Mironov. An approach to predict cis-regulatory modules and identify conserved regulatory grammar in eukaryotic genomes (poster)

Russian-German seminar Regulation and Evolution of Cellular Systems Munich, Germany, 10-13.05.2011
A.Nikulova. An approach to identify conserved regualtory grammar and predict cis-regulatory modules in eukaryptic genomes (poster)
Information Technologies and Systems, ITaS '10 (The 33th conference organized by Council of Young Scientists and Engineers of IITP RAS), 2010, Gelendzhik, Russia
.., .., .. Drosophila (poster)

Information Technologies and Systems, ITaS '09 (The 32th conference organized by Council of Young Scientists and Engineers of IITP RAS), 2009, Bekasovo, Russia
A.A. Nikulova, R.A. Sutormin, A.V. Favorov, A.A. Mironov. Prediction and Comparative Analysis of Transcriptional Regulatory Regions in Drosophila Genomes (oral presentation)

International Moscow Conference on Computational Molecular Biology MCCMB09, 2009, Moscow, Russia
A.A. Nikulova, A.A. Mironov. Prediction of regulatory elements in Drosophila genomes using hidden Markov model based on the arrangements of transcription factor binding sites (poster)

Information Technologies and Systems, ITaS '08 (The 31th conference organized by Council of Young Scientists and Engineers of IITP RAS), 2008, Gelendzhik, Russia
.., .., .., .. HMM, , Drosophila (oral presentation)

Information Technologies and Systems, ITaS '07 (The 30th conference organized by Council of Young Scientists and Engineers of IITP RAS), 2007, Zvenigorod, Russia
.., .. (poster)

International Moscow Conference on Computational Molecular Biology MCCMB07, 2007, Moscow, Russia
A.A. Nikulova, A.A. Mironov. Computational prediction and analysis of transcriptional regulatory modules in mammals (poster)
III International Conference Lomonosov-2006, 2006, Moscow, Russia
Percovskaya I.M., Nikulova A.A. Computational identification of cis-regulatory modules in vertebrates (oral presentation)

International Moscow Conference on Computational Molecular Biology MCCMB05, 2005, Moscow, Russia
A.S. Karyagina, A.S. Ershova, I.A. Olovnikov, E.A. Aksianov, A.Yu. Ryazanova, T.A. Salimonova, A.A. Nikulova, S.A. Spirin, A.V. Alexeevski, E.A. Kubareva. Analysis of conserved hydrophobic cores in proteins and supramolecular complexes (poster)